Publications
2024
San Juan, J. E., Wei, W. G., & Yang, J. Q. (2024). Impact of salinity on the erosion threshold, yield stress, and gelatinous state of a cohesive clay. Journal of Geophysical Research: Earth Surface, 129, e2023JF007485.
Yang, J. Q. (2024). “The effect of emergent vegetation on the transport of solutes and particles in the surface water and hyporheic zone of aquatic ecosystems: A review,” Environmental Science & Ecotechnology. (accepted)
In Review
Brittany; Lima, Bruno; Chen, Ruoqiong; Yang, Judy Q.; Wei, Guanju; Chumber, Ashwani K.; Herzberg, M; "Effects of fluid shear stress on oral biofilm formation and composition and the transcriptional response of Streptococcus gordonii," 2024 (submitted).
Y. Li, M.Hondzo, and J. Yang, "A synthetic clay removes Microcystis Aeruginosa efficiently," 2024 (invited to resubmit).
2023
Wei, G., & Yang, J. Q. (2023). Impacts of hydrodynamic conditions and microscale surface roughness on the critical shear stress to develop and thickness of early-stage Pseudomonas putida biofilms. Biotechnology and Bioengineering, 1– 12.
Wei, G., & Yang, J. Q. (2023). Microfluidic investigation of the impacts of flow fluctuations on the development of Pseudomonas putida biofilms. npj Biofilms and Microbiomes, 9 , 73.
Huang, S., & Yang, J. Q. (2023). Impacts of channel-spanning log jams on hyporheic flow. Water Resources Research, 59, e2023WR035217.
2022
Huang, S., & Yang, J. Q. (2022). Impacts of emergent vegetation on hyporheic exchange. Geophysical Research Letters, 49, e2022GL099095.
Li, Y., Sanfilippo, J. E., Kearns, D., & Yang, J. Q. (2022). Corner flows induced by surfactant-producing bacteria Bacillus subtilis and Pseudomonas fluorescens. Microbiology Spectrum, 10(5), e03233-22.
2021
Yang, J. Q., J. Sanfilippo, N. Abbasi, Z. Gitai, B. Bassler, and H. Stone (2021), Evidence for biosurfactant induced flow in corners and bacterial spreading in unsaturated porous media. Proceedings of the National Academy of Sciences, 118, e2111060118.
Yang, J. Q., X. Zhang, I. C. Bourg, and H. A. Stone (2021), 4D imaging reveals mechanisms of clay carbon protection and release. Nature Communications, 12, 622.
2016-2020
Yang, J. Q., and H. M. Nepf (2019), Impacts of vegetation on bed load transport rate and bedform characteristics. Water Resources Research, 55.
Yang, J.Q., and H.M Nepf (2018), A turbulence-based bed-load transport model for bare and vegetated channels. Geophysical Research Letters, 45.
Yang, J. Q., C. Hayoon, and H. M. Nepf (2016), The onset of sediment transport in vegetated channels predicted by turbulent kinetic energy. Geophysical Research Letters , 43 , 11,261–11,268.
Yang, J.Q., F. Kerger, and H.M. Nepf (2015), Estimation of the bed shear stress in vegetated and bare channels. Water Resources Research, 51, 3647-3663.
Kinsey, J.C., Q. Yang, and J.C. Howland (2014). Nonlinear Dynamic Model-Based State Estimators for Underwater Navigation of Remotely Operated Vehicles. IEEE Transactions on Control Systems Technology, 22(5), 1845-1854.